Disease Development Associated with Early-Season Hail Damage in Corn

Published: July 7, 2022 | Updated: July 10, 2025

Disease Development Associated with Early-Season Hail Damage in Corn

By Amy Timmerman - Extension Educator, Kyle Broderick - Extension Educator and Coordinator of the UNL Plant and Pest Diagnostic Clinic, Tamra Jackson-Ziems - Extension Plant Pathologist

Side-by-side images showing bacterial leaf streak and common smut in corn: close-up of a stalk cross-section with discoloration (left) and a field plant with large smut galls along the stalk and leaf midrib (right).

When weather wounds corn, bacteria move in — learn how to identify and manage the most common infections showing up now.

Photos by Amy Timmerman, Tamra Jackson-Ziems and Kyle Broderick | Nebraska Extension

Several diseases have been confirmed in samples from corn fields across the state that were damaged by earlier storms. Severe weather conditions including hail, high wind, heavy rain and sandblasting have caused plant injury, which has provided an opportunity for pathogens to infect. Producers and consultants should monitor for diseases and assess the risks for later in the season.

Bacterial Diseases

Bacterial diseases in corn have been confirmed in fields damaged by severe weather. Goss’s bacterial wilt and blight, and bacterial leaf streak have been confirmed. Current warm temperatures, rainfall/overhead irrigation and wind will support spread and further development of these diseases.

Goss's Bacterial Wilt and Blight

Goss’s bacterial wilt and blight (caused by Clavibacter nebraskensis) can cause different disease symptoms depending upon the crop stage when plants are infected. The most common symptoms are leaf “blight” lesions. These lesions have water-soaked, discolored lesions, especially along wounds. Lesions may have dark green/black “freckles” or flecks on the edges of dark, water-soaked lesions (Figure 1) that are unique to Goss’s blight. Freckles may appear translucent when backlit by bright light such as the sun. 

The second feature of the disease is the presence of bacterial exudate, often called “bacterial ooze” on the leaves, which occurs when the bacteria are secreted on the surface of the lesions. Once the ooze is dried, it will give the leaf a shiny or sparkling appearance. Be sure to check the bottom side of the leaf carefully as well, as the ooze may be washed away by rainfall or overhead irrigation.

When plants are damaged early, usually by V6 stage, they can sometimes become infected at multiple nodes and develop a less common systemic wilt. Affected plants may be stunted and wilted and seemingly “melt down” quickly. These plants often die during early season as they are overcome with bacteria throughout. Discoloration is visible inside the stalk but does not have the same putrid odor associated with bacterial stalk rot (below).

corn leaf with black spots, yellowing and wilting at right edge
Figure 1a. Goss’s bacterial wilt and blight can cause leaf lesions that are dark and water-soaked, and may have dark “freckles” on the edges. Shiny bacterial exudate may appear on the leaf surfaces.
ground view of corn stalks wilting and browning at the bottom of the stem
Figure 2b. Systemic Goss’s wilt can develop in plants that were wounded during the seedling stages and cause affected plants to die and collapse.
closeup of two corn stalk stems turning brown near the root from disease
Figure 2c. Discoloration in the corn stalk from Goss’s wilt.
dissection of corn stalk near root exhibiting signs of disease with brown discoloration on left side through center
Figure 2d. Discoloration of cut stalks from Goss's wilt. 

Bacterial Leaf Streak

Bacterial leaf streak is caused by Xanthomomas vasicola pv. vasculorum. Symptoms are interveinal leaf streaks that are brown, tan or yellow, which can be short or very long (Figure 2a). Lesions are often strikingly yellow when backlit against the sun. A key characteristic of lesions is the wavy, jagged margins, which can be used to differentiate them from the smooth, rectangular lesions of the fungal disease, gray leaf spot. These bacteria do not require wounds to infect plants, but bacterial leaf streak can be more common after heavy, wind-driven rain.

Corn leaf showing narrow, yellow to orange lesions confined between veins — a typical symptom of bacterial leaf streak.
Figure 2a. Bacterial leaf streak lesions are wavy and between veins.  
Backlit corn leaf with elongated yellow lesions running between veins, highlighting typical symptoms of bacterial leaf streak.
 Figure 2b. Bacterial leaf streak lesions may appear bright yellow when backlit.

Bacterial Stalk Rot

Bacterial stalk rot, caused by Erwinia dissolvens or E. chrysanthemi, survives in corn and sorghum residue. Symptoms start as lesion development on the lower stalk or discoloration of a leaf sheath and then systematically move up the stalk and throughout the plant. A foul “fishy” odor is common, and the top of the plant can often be easily removed (Figure 3). As the disease progresses, the stalk may rot and the plant can collapse. Bacterial stalk rot can affect the plant at any node and when infection occurs high on the plant it may impair normal tasseling. When stalks are split, there is internal discoloration and soft slimy rot especially at the nodes but can spread throughout the plant and may hollow out stalks.

Bacterial stalk rot
Figure 3. Bacterial stalk rot may develop in the bottom of plants standing in water or in the tops of plants, rotting out several nodes that can be easily removed (pictured). Affected plant parts often have a foul odor.

Fungal Diseases

Common Smut

Common smut (Figure 4) occurs in almost every field in Nebraska but is more prevalent after plants are injured. This disease is caused by the fungus Ustilago maydis and can also be called “boil or blister smut.” Smut galls may look like mushrooms or warts and can develop on any plant part, including leaves (Figure 4), stalks and tassels, but it’s most recognizable when they develop on the ear. Initially, galls are white to gray in color and fleshy to the touch. As the gall matures, it ruptures, releasing a large amount of black teliospores that overwinter in the soil for future years.

Common smut galls
Figure 4a. Common smut is caused by a fungus that can cause development of tumor-like galls or warts anywhere the plant is injured or on the ears. 
Corn plant with large, swollen galls caused by common smut, forming along the stalk and leaf midrib with dark fungal spores beginning to emerge.
Figure 4b. Common smut galls forming along the stalk and leaf midrib of a corn plant.

Diagnostics

Some of these diseases may mimic symptoms of other diseases that may require very different management strategies. All of those listed are caused by pathogens that overwinter, so disease may return in subsequent years when conditions are favorable. Be sure to submit samples to the UNL Plant and Pest Diagnostic Clinic for help identifying diseases and other problems. Some commercially available tests are available that can successfully identify some of these pathogens. However, their hyper-sensitivity can lead to false positive results when samples that are easily contaminated by handling, so take care when interpreting results.  

Management

Unfortunately, fungicides are ineffective against the diseases listed here, making accurate diagnoses important for effective management decisions. Some bactericides are labeled for corn, but their use has had inconsistent results on these diseases and can be cost-prohibitive since most are not absorbed by the plant and require repeated applications. Selecting more resistant corn hybrids (with better disease ratings) for these diseases can help reduce disease pressure and losses. 

Additional Information

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